| Country/Territory | Site Name | IBA Criteria | Final Code |
|---|---|---|---|
| Malaysia | Bako-Buntal Bay | A1, A3, A4i | MY037 |
| Malaysia | Bau Limestone | A1, A3 | MY038 |
| Malaysia | Belum-Temenggor | A1, A2, A3 | MY007 |
| Malaysia | Bintang Range | A1, A2, A3 | MY004 |
| Malaysia | Brunei Bay | A1, A4i | MY055 |
| Malaysia | Central Titiwangsa Range | A1, A2, A3 | MY009 |
| Malaysia | Crocker Range | A1, A2, A3 | MY020 |
| Malaysia | Danum Valley Conservation Area | A1, A2, A3 | MY024 |
| Malaysia | Danum-Linau | A1, A2, A3 | MY046 |
| Malaysia | Dulit Range | A1, A2, A3 | MY048 |
| Malaysia | Endau-Rompin | A1, A2, A3 | MY013 |
| Malaysia | Gunung Penrissen | A1, A2, A3 | MY040 |
| Malaysia | Gunung Pueh | A1, A2, A3 | MY035 |
| Malaysia | Hulu Gombak-Sungai Lalang forest | A1, A2, A3 | MY010 |
| Malaysia | Kabili-Sepilok | A1, A2, A3 | MY029 |
| Malaysia | Kelabit Highlands | A1, A2, A3 | MY054 |
| Malaysia | Kinabatangan floodplain | A1, A2, A3, A4i | MY023 |
| Malaysia | Kledang Range | A1, A3 | MY008 |
| Malaysia | Klias peninsula | A1, A3, A4i | MY028 |
| Malaysia | Krau Wildlife Reserve | A1, A2, A3 | MY016 |
| Malaysia | Kulamba Wildlife Reserve | A1, A3 | MY030 |
| Malaysia | Lambir Hills National Park | A1, A3 | MY051 |
| Malaysia | Lanjak Entimau Wildlife Sanctuary | A1, A2, A3 | MY043 |
| Malaysia | Loagan Bunut National Park | A1, A3 | MY052 |
| Malaysia | Maliau Basin Conservation Area | A1, A2, A3 | MY025 |
| Malaysia | Mantanani islands | A1, A2, A4ii | MY032 |
| Malaysia | Matang coast | A1, A4i | MY005 |
| Malaysia | Mount Kinabalu | A1, A2, A3 | MY021 |
| Malaysia | Mulu - Buda Protected Area | A1, A2, A3 | MY053 |
| Malaysia | Nakawan Range | A1, A3 | MY001 |
| Malaysia | Niah National Park | A1, A2, A3 | MY050 |
| Malaysia | North-central Selangor coast | A1, A4i | MY011 |
| Malaysia | Panti forest | A1, A3 | MY014 |
| Malaysia | Pondok Tanjung Forest Reserve | A1, A3 | MY006 |
| Malaysia | Pulau Bruit National Park | A1, A4i | MY042 |
| Malaysia | Sadong-Saribas coast | A1, A3, A4i | MY041 |
| Malaysia | Similajau National Park | A1, A3 | MY049 |
| Malaysia | Sipadan islands | A1, A2 | MY031 |
| Malaysia | South-East Pahang peat swamp forest | A1, A3 | MY018 |
| Malaysia | South-west Johor coast | A1, A4i | MY015 |
| Malaysia | Tabin Wildlife Reserve | A1, A2, A3 | MY027 |
| Malaysia | Taman Negara National Park | A1, A2, A3 | MY017 |
| Malaysia | Tanjung Datu-Samunsam Protected Area | A1, A2, A3 | MY034 |
| Malaysia | Tanjung Tuan | A1, A4iv | MY012 |
| Malaysia | Tawau Hills Park | A1, A2, A3 | MY026 |
| Malaysia | Teluk Air Tawar-Kuala Muda coast | A1, A4i | MY003 |
| Malaysia | Tempasuk plains | A1 | MY033 |
| Malaysia | Trus Madi Range | A1, A2, A3 | MY022 |
| Malaysia | Ulu Muda | A1, A3 | MY002 |
| Malaysia | Usun Apau plateau | A1, A2, A3 | MY047 |
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